MERNA
A Database of Metal Ion Binding Sites in RNA
There are 128 records.
pdb_id |
Metal -> |
abbreviation |
metal_name |
atom_no |
res_no |
RNA Ligand -> |
element_id |
distancemrna |
rnaligand |
atom_no |
res_no |
chain |
rnabase |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
5.33 |
O2P |
1278 |
74 |
A |
C74 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.915 |
O2P |
1298 |
75 |
A |
A75 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
5.687 |
N9 |
1308 |
75 |
A |
A75 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.014 |
N7 |
1310 |
75 |
A |
A75 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.564 |
N6 |
1313 |
75 |
A |
A75 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.764 |
N7 |
1332 |
76 |
A |
G76 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.872 |
O6 |
1335 |
76 |
A |
G76 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
5.596 |
N3 |
1356 |
77 |
A |
C77 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
3.94 |
N4 |
1358 |
77 |
A |
C77 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.822 |
O7 |
1691 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
3.777 |
O1A |
1693 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
2.245 |
O2A |
1694 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1660 |
106 |
|
M12526 |
4.107 |
O3A |
1695 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.332 |
N3 |
971 |
59 |
A |
U59 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
3.724 |
O4 |
973 |
59 |
A |
U59 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.114 |
N7 |
990 |
60 |
A |
G60 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
2.161 |
O6 |
993 |
60 |
A |
G60 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
3.702 |
N1 |
994 |
60 |
A |
G60 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.698 |
N2 |
996 |
60 |
A |
G60 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.952 |
N3 |
997 |
60 |
A |
G60 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.634 |
N6 |
1016 |
61 |
A |
A61 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
4.219 |
N1 |
1017 |
61 |
A |
A61 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.618 |
N3 |
1019 |
61 |
A |
A61 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.65 |
O6 |
1335 |
76 |
A |
G76 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.166 |
O2 |
1355 |
77 |
A |
C77 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
4.251 |
N3 |
1356 |
77 |
A |
C77 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
4.479 |
N4 |
1358 |
77 |
A |
C77 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.45 |
N7 |
1375 |
78 |
A |
G78 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
2.472 |
O6 |
1378 |
78 |
A |
G78 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
3.73 |
N1 |
1379 |
78 |
A |
G78 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.582 |
N2 |
1381 |
78 |
A |
G78 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.996 |
N3 |
1382 |
78 |
A |
G78 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
4.898 |
N6 |
1413 |
80 |
A |
A80 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.945 |
O7 |
1691 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
4.583 |
O1A |
1693 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
5.471 |
O2A |
1694 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1661 |
107 |
|
M12527 |
3.518 |
O3A |
1695 |
105 |
N/A |
TPP105 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
4.202 |
O3* |
1029 |
62 |
A |
U62 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
5.79 |
O2* |
1031 |
62 |
A |
U62 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
2.187 |
O1P |
1042 |
63 |
A |
C63 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
4.241 |
O2P |
1043 |
63 |
A |
C63 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
4.64 |
O5* |
1044 |
63 |
A |
C63 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
4.39 |
O3* |
1049 |
63 |
A |
C63 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
4.194 |
O1P |
1062 |
64 |
A |
U64 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
2.362 |
O2P |
1063 |
64 |
A |
U64 |
2HOL |
|
Ba |
Barium |
1662 |
108 |
|
M12528 |
4.784 |
O5* |
1064 |
64 |
A |
U64 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.183 |
O3* |
585 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
4.311 |
O2* |
587 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.625 |
O1P |
601 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.843 |
O5* |
603 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.819 |
O4* |
606 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
4.627 |
N9 |
612 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
2.52 |
N7 |
614 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
3.856 |
N6 |
617 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.544 |
N1 |
618 |
41 |
A |
A41 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.707 |
N7 |
636 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
4.336 |
O6 |
639 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.871 |
N1 |
640 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1663 |
109 |
|
M12529 |
5.705 |
O1P |
917 |
57 |
A |
C57 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
4.527 |
O2P |
559 |
39 |
A |
U39 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.39 |
O5* |
560 |
39 |
A |
U39 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.962 |
N1 |
569 |
39 |
A |
U39 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.526 |
O4 |
574 |
39 |
A |
U39 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
4.213 |
O2P |
579 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.271 |
O5* |
580 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
4.654 |
N9 |
589 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
2.488 |
N7 |
591 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
3.583 |
O6 |
594 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.285 |
N1 |
595 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.916 |
N3 |
598 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
5.362 |
O1P |
623 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1664 |
110 |
|
M12530 |
4.969 |
O2P |
624 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.058 |
O2P |
872 |
54 |
A |
U54 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.17 |
O3* |
1392 |
79 |
A |
U79 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
4.086 |
O1P |
1397 |
80 |
A |
A80 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
3.241 |
O2P |
1398 |
80 |
A |
A80 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.319 |
O5* |
1399 |
80 |
A |
A80 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.933 |
N9 |
1408 |
80 |
A |
A80 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.118 |
N7 |
1410 |
80 |
A |
A80 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
4.634 |
O2P |
1420 |
81 |
A |
G81 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.869 |
O5* |
1421 |
81 |
A |
G81 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.857 |
N9 |
1430 |
81 |
A |
G81 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
3.873 |
N7 |
1432 |
81 |
A |
G81 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
4.674 |
O6 |
1435 |
81 |
A |
G81 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
4.275 |
N7 |
1455 |
82 |
A |
G82 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
4.84 |
O6 |
1458 |
82 |
A |
G82 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
4.291 |
O6 |
1481 |
83 |
A |
G83 |
2HOL |
|
Ba |
Barium |
1665 |
111 |
|
M12531 |
5.427 |
N1 |
1482 |
83 |
A |
G83 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.881 |
O1P |
448 |
34 |
A |
A34 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
4.269 |
O2P |
449 |
34 |
A |
A34 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.451 |
O5* |
450 |
34 |
A |
A34 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.956 |
O3* |
455 |
34 |
A |
A34 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
3.876 |
O2P |
471 |
35 |
A |
A35 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.008 |
O5* |
472 |
35 |
A |
A35 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.408 |
N9 |
481 |
35 |
A |
A35 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
4.149 |
N7 |
483 |
35 |
A |
A35 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.412 |
N6 |
486 |
35 |
A |
A35 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
4.569 |
O2P |
493 |
36 |
A |
G36 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.491 |
O5* |
494 |
36 |
A |
G36 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
4.863 |
N9 |
503 |
36 |
A |
G36 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
2.71 |
N7 |
505 |
36 |
A |
G36 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
3.673 |
O6 |
508 |
36 |
A |
G36 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.434 |
N1 |
509 |
36 |
A |
G36 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.669 |
N7 |
528 |
37 |
A |
G37 |
2HOL |
|
Ba |
Barium |
1666 |
112 |
|
M12532 |
5.563 |
O6 |
531 |
37 |
A |
G37 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
5.153 |
N7 |
1095 |
65 |
A |
G65 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
5.294 |
O6 |
1098 |
65 |
A |
G65 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
5.644 |
O2P |
1106 |
66 |
A |
G66 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
5.805 |
N9 |
1116 |
66 |
A |
G66 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
3.67 |
N7 |
1118 |
66 |
A |
G66 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
4.013 |
O6 |
1121 |
66 |
A |
G66 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
5.944 |
N1 |
1122 |
66 |
A |
G66 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
4.799 |
N7 |
1141 |
67 |
A |
A67 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
4.344 |
N6 |
1144 |
67 |
A |
A67 |
2HOL |
|
Ba |
Barium |
1667 |
113 |
|
M12533 |
5.881 |
O4 |
1166 |
68 |
A |
U68 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.554 |
N4 |
554 |
38 |
A |
C38 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
4.87 |
O4 |
574 |
39 |
A |
U39 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.988 |
N7 |
591 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
2.914 |
O6 |
594 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
3.802 |
N1 |
595 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.486 |
N2 |
597 |
40 |
A |
G40 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.934 |
O1P |
623 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.953 |
O5* |
625 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.369 |
O3* |
630 |
42 |
A |
G42 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
4.544 |
O1P |
646 |
43 |
A |
A43 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
2.951 |
O2P |
647 |
43 |
A |
A43 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
4.932 |
O5* |
648 |
43 |
A |
A43 |
2HOL |
|
Ba |
Barium |
1668 |
114 |
|
M12534 |
5.409 |
O1P |
668 |
44 |
A |
A44 |