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An organized view of the transcripome



Library:6812 (dbEST ID)

HTC

Library Description

Organism:Homo sapiens
Developmental stage:Adult
Tissue:Hypothalamus
Vector:pBluescript sk(-)
Cloning site 1:EcoRI
Cloning site 2:XhoI
Lab host:SOLR

Source: Zeguang Han, Chinese National Human Genome Center at Shanghai

Gene Content Analysis

3,143 ESTs from this library were grouped into 1,966 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
1 318 Hs.699980 CDNA FLJ39549 fis, clone RECTM1000051.
1 318 Hs.699387 Solute carrier family 15, member 4 (SLC15A4), mRNA.
1 318 Hs.696221 Full length insert cDNA clone YW23E08.
1 318 Hs.696074 ATP-dependent RNA helicase #46.
1 318 Hs.695943 ADP-ribosylation factor protein 4 (ARF4).
1 318 Hs.694911 Transcribed locus.
1 318 Hs.694195 Transcribed locus.
1 318 Hs.693755 Transcribed locus, strongly similar to XP_531501.2 PREDICTED: solute carrier family 19 member 1 isoform 3 [Pan troglodytes].
1 318 Hs.688926 MRNA; cDNA DKFZp686D2348 (from clone DKFZp686D2348).
1 318 Hs.688572 Transcribed locus.
1 318 Hs.688539 Transcribed locus.
1 318 Hs.6874 MRNA full length insert cDNA clone EUROIMAGE 1695343.
1 318 Hs.6834 Formin binding protein 4 (FNBP4), mRNA.
1 318 Hs.682303 Transcribed locus.
1 318 Hs.680350 Transcribed locus.
1 318 Hs.6799 Family with sequence similarity 98, member B, mRNA (cDNA clone IMAGE:4430622).
1 318 Hs.679542 Transcribed locus.
1 318 Hs.678067 Transcribed locus.
1 318 Hs.678064 Transcribed locus.
1 318 Hs.678063 Transcribed locus.
1 318 Hs.678062 Transcribed locus.
1 318 Hs.678060 Transcribed locus.
1 318 Hs.678059 Transcribed locus.
1 318 Hs.678058 Transcribed locus.
1 318 Hs.678057 Transcribed locus.
1 318 Hs.678056 Transcribed locus.
1 318 Hs.676798 Transcribed locus.
1 318 Hs.676796 Transcribed locus.
1 318 Hs.676795 Transcribed locus.
1 318 Hs.676793 Transcribed locus.
1 318 Hs.676791 Transcribed locus.
1 318 Hs.676789 Transcribed locus.
1 318 Hs.676788 Transcribed locus.
1 318 Hs.676787 Transcribed locus.
1 318 Hs.676784 Transcribed locus.
1 318 Hs.676783 Transcribed locus.
1 318 Hs.676782 Transcribed locus.
1 318 Hs.676781 Transcribed locus.
1 318 Hs.676779 Transcribed locus.
1 318 Hs.6764 CDNA FLJ56474 complete cds, highly similar to Histone deacetylase 6.
1 318 Hs.676266 CDNA FLJ56769 complete cds, weakly similar to Nuclear pore complex-interacting protein.
1 318 Hs.675942 CDNA FLJ34505 fis, clone HLUNG2005813.
1 318 Hs.675030 CDNA FLJ46647 fis, clone TRACH3004288.
1 318 Hs.674629 Transcribed locus.
1 318 Hs.6729 Transcribed locus.
1 318 Hs.672175 Transcribed locus.
1 318 Hs.67201 Full length insert cDNA clone YA82F10.
1 318 Hs.671456 CDNA FLJ45493 fis, clone BRTHA2008598.
1 318 Hs.671248 Transcribed locus.
1 318 Hs.670746 Transcribed locus, moderately similar to NP_057046.1 FCF1 small subunit [Homo sapiens].
1 318 Hs.669603 Transcribed locus.
1 318 Hs.669465 Transcribed locus.
1 318 Hs.668312 MRNA; cDNA DKFZp761B0218 (from clone DKFZp761B0218).
1 318 Hs.668222 Transcribed locus.
1 318 Hs.667725 Transcribed locus.
1 318 Hs.667635 Transcribed locus, strongly similar to NP_054879.3 makorin ring finger protein 2 [Homo sapiens].
1 318 Hs.667562 Transcribed locus, strongly similar to NP_004376.2 versican isoform 1 [Homo sapiens].
1 318 Hs.66713 Hepatitis delta antigen interacting protein A (dipA).
1 318 Hs.667095 Transcribed locus.
1 318 Hs.666634 Transcribed locus.
1 318 Hs.666085 Transcribed locus.
1 318 Hs.664813 Transcribed locus.
1 318 Hs.664764 CDNA FLJ36493 fis, clone THYMU2018547.
1 318 Hs.663961 Transcribed locus, strongly similar to XP_001720983.1 PREDICTED: hypothetical protein [Homo sapiens].
1 318 Hs.662162 Transcribed locus.
1 318 Hs.661891 FIC domain containing, mRNA (cDNA clone MGC:5623 IMAGE:3462741).
1 318 Hs.661748 Transcribed locus, strongly similar to NP_689514.1 Morf4 family associated protein 1-like 1 [Homo sapiens].
1 318 Hs.661665 CDNA FLJ11614 fis, clone HEMBA1004015.
1 318 Hs.661554 MRNA; cDNA DKFZp564H0616 (from clone DKFZp564H0616).
1 318 Hs.661243 Transcribed locus, strongly similar to NP_005436.1 structural maintenance of chromosomes 3 [Homo sapiens].
1 318 Hs.661055 Postmeiotic segregation increased 2-like 1 pseudogene, mRNA (cDNA clone IMAGE:5284726).
1 318 Hs.660757 Protein-serine/threonine kinase gene.
1 318 Hs.659932 Kox6 mRNA for zinc finger protein, partial.
1 318 Hs.659839 Tropomodulin 2 (neuronal), mRNA (cDNA clone MGC:39481 IMAGE:4815047).
1 318 Hs.659604 MRNA; cDNA DKFZp686E13243 (from clone DKFZp686E13243).
1 318 Hs.659513 Down syndrome cell adhesion molecule like-protein 1a (DSCAML1) mRNA, complete cds, alternatively spliced.
1 318 Hs.659411 Transcribed locus.
1 318 Hs.659124 Transcribed locus.
1 318 Hs.659095 CDNA FLJ11971 fis, clone HEMBB1001208.
1 318 Hs.658982 CDNA clone IMAGE:4642241.
1 318 Hs.658977 CDNA FLJ32162 fis, clone PLACE6000325.
1 318 Hs.658922 Musashi homolog 2 (Drosophila) (MSI2), transcript variant 2, mRNA.
1 318 Hs.658612 Transcribed locus.
1 318 Hs.658434 Autoantigen DFS70.
1 318 Hs.658392 Transcribed locus, strongly similar to NP_032027.2 FYVE, RhoGEF and PH domain containing 1 [Mus musculus].
1 318 Hs.658328 CDNA FLJ58810 complete cds, highly similar to Contactin-associated protein-like 3 precursor.
1 318 Hs.658209 CDNA: FLJ21923 fis, clone HEP04081.
1 318 Hs.658079 Small EDRK-rich factor 1B (centromeric) (SERF1B), mRNA.
1 318 Hs.658020 Transcribed locus.
1 318 Hs.657890 Transcribed locus, strongly similar to NP_001091970.1 sickle tail isoform 2 [Homo sapiens].
1 318 Hs.657312 CDNA FLJ77495 complete cds, highly similar to Homo sapiens progestin and adipoQ receptor family member III (PAQR3) mRNA.
1 318 Hs.657283 Transcribed locus, strongly similar to XP_530509.2 PREDICTED: hypothetical protein [Pan troglodytes].
1 318 Hs.657275 Em:U62317.15 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.Em:U62317.15.V5).
1 318 Hs.657273 Unc-13 homolog C (C. elegans), mRNA (cDNA clone IMAGE:5744991).
1 318 Hs.657061 CDNA FLJ60055 complete cds, highly similar to Rattus norvegicus Ssu72 RNA polymerase II CTD phosphatase homolog, mRNA.
1 318 Hs.656780 MRNA; cDNA DKFZp761I1311 (from clone DKFZp761I1311).
1 318 Hs.656715 CDNA FLJ13522 fis, clone PLACE1005884.
1 318 Hs.656696 Transcribed locus.
1 318 Hs.656624 Transcribed locus.
1 318 Hs.656271 CDNA FLJ33857 fis, clone CTONG2006004.

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Source: NCBI UniGene

EST Sequences

4,631 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • brain
  • normal
  • adult
  • hypothalamus
  • bulk

Source: NCBI Clone Registry



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