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Library:1661 (dbEST ID)
Organism: | Homo sapiens |
Developmental stage: | adult |
Organ: | lung |
Tissue: | squamous cell carcinoma, poorly differentiated (4 pooled tumors, including primary and metastatic) |
Vector: | pT7T3D-PacI |
Vector type: | phagemid (ampicillin resistant) |
Lab host: | DH10B (phage-resistant) |
1st strand cDNA was prepared from pooled lung tumor tissue, and was then primed with a Not I - oligo(dT) primer. Double-stranded cDNA was ligated to Eco RI adaptors (Pharmacia), digested with Not I and cloned into the Not I and Eco RI sites of the modified pT7T3 vector. Library went througb one round of normalization. Library constructed by Bento Soares and M. Fatima Bonaldo.
Source: Robert Strausberg, Ph.D.
6,257 ESTs from this library were grouped into 3,961 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
ESTs | TPM | UniGene Entry | ||
---|---|---|---|---|
2 | 320 | ![]() |
Hs.8102 | Ribosomal protein S20, 5'UTR region. |
2 | 320 | ![]() |
Hs.79088 | EST from clone 43449, 5' end. |
2 | 320 | ![]() |
Hs.78466 | CDNA FLJ52462 complete cds, moderately similar to Mus musculus proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 (Psmd8), mRNA. |
2 | 320 | ![]() |
Hs.7753 | Calumenin. |
2 | 320 | ![]() |
Hs.77274 | RNA for urokinase-type plasminogen activator. |
2 | 320 | ![]() |
Hs.77060 | Proteasome (prosome, macropain) subunit, beta type, 6 (PSMB6), mRNA. |
2 | 320 | ![]() |
Hs.76873 | CDNA FLJ35130 fis, clone PLACE6008793, highly similar to Hyaluronidase-2 precursor (EC 3.2.1.35). |
2 | 320 | ![]() |
Hs.76753 | Endoglin mRNA, 3' end. |
2 | 320 | ![]() |
Hs.76394 | Enoyl Coenzyme A hydratase, short chain, 1, mitochondrial, mRNA (cDNA clone MGC:1513 IMAGE:2907059). |
2 | 320 | ![]() |
Hs.76364 | Interferon gamma responsive transcript IRT-1. |
2 | 320 | ![]() |
Hs.76224 | CDNA FLJ53670 complete cds, highly similar to EGF-containing fibulin-like extracellularmatrix protein 1 precursor. |
2 | 320 | ![]() |
Hs.76152 | Uterine water channel=28 kda erythrocyte integral membrane protein homolog [human, uterus, mRNA, 1340 nt]. |
2 | 320 | ![]() |
Hs.75864 | GP36b glycoprotein. |
2 | 320 | ![]() |
Hs.75348 | Proteasome (prosome, macropain) activator subunit 1 (PA28 alpha), mRNA (cDNA clone MGC:4018 IMAGE:2961448). |
2 | 320 | ![]() |
Hs.75243 | Homolog of Drosophila female sterile homeotic. |
2 | 320 | ![]() |
Hs.7517 | CDNA FLJ76577 complete cds. |
2 | 320 | ![]() |
Hs.74471 | CDNA FLJ53043 complete cds, highly similar to Gap junction alpha-1 protein. |
2 | 320 | ![]() |
Hs.74405 | HS1 protein. |
2 | 320 | ![]() |
Hs.73797 | CDNA FLJ56720 complete cds, highly similar to Guanine nucleotide-binding protein alpha-15 subunit. |
2 | 320 | ![]() |
Hs.73722 | Apurinic/apyrimidinic endonuclease. |
2 | 320 | ![]() |
Hs.7367 | Full length insert cDNA clone ZD78D08. |
2 | 320 | ![]() |
Hs.7200 | (clone Zap2) mRNA fragment. |
2 | 320 | ![]() |
Hs.71941 | CDNA FLJ52298 complete cds. |
2 | 320 | ![]() |
Hs.716658 | CDNA FLJ36461 fis, clone THYMU2014901, highly similar to HOMEOBOX PROTEIN SIX1. |
2 | 320 | ![]() |
Hs.716489 | CDNA FLJ56760 complete cds, highly similar to Immediate early response gene 5 protein. |
2 | 320 | ![]() |
Hs.716471 | CDNA FLJ33669 fis, clone BRAMY2028740. |
2 | 320 | ![]() |
Hs.716439 | CDNA FLJ60659 complete cds, weakly similar to N-acetylglucosamine-6-phosphatedeacetylase (EC 3.5.1.25). |
2 | 320 | ![]() |
Hs.716424 | CDNA FLJ90569 fis, clone OVARC1001596, highly similar to Homo sapiens ADP-ribosylation factor-like 2 binding protein (ARL2BP), mRNA. |
2 | 320 | ![]() |
Hs.716405 | Aryl sulfotransferase mRNA, intron 1. |
2 | 320 | ![]() |
Hs.716403 | Homolog of Nedd5 (hNedd5). |
2 | 320 | ![]() |
Hs.716400 | Rer1 protein. |
2 | 320 | ![]() |
Hs.716374 | SMRP. |
2 | 320 | ![]() |
Hs.716373 | ERPROT 213-21. |
2 | 320 | ![]() |
Hs.716371 | UEV1As (UBE2V) mRNA, alternatively spliced. |
2 | 320 | ![]() |
Hs.7158 | MRNA; cDNA DKFZp566H073 (from clone DKFZp566H073). |
2 | 320 | ![]() |
Hs.715556 | DNA-PK interaction protein (KIP). |
2 | 320 | ![]() |
Hs.715540 | Nrf2=NF-E2-like basic leucine zipper transcriptional activator [human, hemin-induced K562 cells, mRNA, 2304 nt]. |
2 | 320 | ![]() |
Hs.715499 | (TL27) mRNA from (PC3) cell line. |
2 | 320 | ![]() |
Hs.714955 | Transcribed locus. |
2 | 320 | ![]() |
Hs.714892 | Transcribed locus. |
2 | 320 | ![]() |
Hs.714791 | Jun oncogene, mRNA (cDNA clone IMAGE:3947905). |
2 | 320 | ![]() |
Hs.714737 | Transcription factor tbx3 (TBX3). |
2 | 320 | ![]() |
Hs.714700 | CDNA FLJ55932 complete cds, highly similar to Homo sapiens WW domain containing adaptor with coiled-coil (WAC), transcript variant 2, mRNA. |
2 | 320 | ![]() |
Hs.714418 | Napsin A aspartic peptidase, mRNA (cDNA clone MGC:22526 IMAGE:4693995). |
2 | 320 | ![]() |
Hs.714402 | Transcribed locus. |
2 | 320 | ![]() |
Hs.714343 | Clone IMAGE:943037, mRNA sequence. |
2 | 320 | ![]() |
Hs.714322 | Clone 37, 5cM region surrounding hepatocyte nuclear factor-1a/MODY3 mRNA. |
2 | 320 | ![]() |
Hs.714302 | Endobrevin. |
2 | 320 | ![]() |
Hs.714301 | Transcribed locus. |
2 | 320 | ![]() |
Hs.713907 | Transcribed locus. |
2 | 320 | ![]() |
Hs.713721 | Transcribed locus, moderately similar to NP_033464.2 ribosomal protein L13a [Mus musculus]. |
2 | 320 | ![]() |
Hs.713632 | CDNA FLJ33305 fis, clone BNGH42003529, highly similar to E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-). |
2 | 320 | ![]() |
Hs.713327 | Transcribed locus. |
2 | 320 | ![]() |
Hs.712666 | MRNA; cDNA DKFZp686K2379 (from clone DKFZp686K2379). |
2 | 320 | ![]() |
Hs.712551 | CDNA FLJ53369 complete cds, highly similar to Carboxypeptidase E precursor (EC 3.4.17.10). |
2 | 320 | ![]() |
Hs.711055 | T-cluster binding protein. |
2 | 320 | ![]() |
Hs.710420 | PREDICTED: Homo sapiens hypothetical protein LOC100133105 (LOC100133105), mRNA. |
2 | 320 | ![]() |
Hs.710184 | Transcribed locus. |
2 | 320 | ![]() |
Hs.710041 | Transcribed locus, strongly similar to NP_990681.1 B-cell translocation gene 1, anti-proliferative [Gallus gallus]. |
2 | 320 | ![]() |
Hs.709775 | MRNA; cDNA DKFZp686I10116 (from clone DKFZp686I10116). |
2 | 320 | ![]() |
Hs.709639 | Zinc finger protein 775, mRNA (cDNA clone MGC:4815 IMAGE:3546283). |
2 | 320 | ![]() |
Hs.709632 | MRNA; cDNA DKFZp761C1717 (from clone DKFZp761C1717). |
2 | 320 | ![]() |
Hs.709513 | ADP-ribosylation factor-like protein 7 (ARL7). |
2 | 320 | ![]() |
Hs.709439 | CDNA FLJ57618 complete cds, moderately similar to Rattus norvegicus macrophage expressed gene 1 (Mpeg1), mRNA. |
2 | 320 | ![]() |
Hs.709327 | UTP18, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone MGC:39182 IMAGE:4861495). |
2 | 320 | ![]() |
Hs.709321 | Interferon-inducible mRNA (cDNA 1-8). |
2 | 320 | ![]() |
Hs.709313 | Beta 2- mu =beta 2-microglobulin [human, SK-MEL-33 cells, mRNA Mutant, 433 nt]. |
2 | 320 | ![]() |
Hs.709235 | Keratin 6 isoform K6f (KRT6F). |
2 | 320 | ![]() |
Hs.709231 | Chromosome 17q12-21 mRNA, clone pOV-2. |
2 | 320 | ![]() |
Hs.709226 | P cadherin. |
2 | 320 | ![]() |
Hs.709208 | CDNA FLJ39295 fis, clone OCBBF2012714, highly similar to GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 1. |
2 | 320 | ![]() |
Hs.709184 | Amyloid protein homologue. |
2 | 320 | ![]() |
Hs.706793 | Clone 334-2C mRNA sequence. |
2 | 320 | ![]() |
Hs.705873 | Transcribed locus. |
2 | 320 | ![]() |
Hs.705480 | Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone IMAGE:4398482). |
2 | 320 | ![]() |
Hs.7036 | CDNA FLJ56394 complete cds, highly similar to N-acetylglucosamine kinase (EC 2.7.1.59). |
2 | 320 | ![]() |
Hs.703354 | Transcribed locus, moderately similar to NP_071432.2 melanoma antigen family F, 1 [Homo sapiens]. |
2 | 320 | ![]() |
Hs.703326 | Transcribed locus, moderately similar to NP_536849.1 cytochrome c oxidase subunit III [Homo sapiens]. |
2 | 320 | ![]() |
Hs.70312 | COX VIIa-L mRNA for liver-specific cytochrome c oxidase (EC 1.9.3.1.). |
2 | 320 | ![]() |
Hs.700699 | Transcribed locus. |
2 | 320 | ![]() |
Hs.699486 | Transcribed locus, moderately similar to NP_001035397.1 F-box protein 8 [Danio rerio]. |
2 | 320 | ![]() |
Hs.699306 | High molecular weight B cell growth factor mRNA sequence. |
2 | 320 | ![]() |
Hs.697228 | Transcribed locus, strongly similar to XP_529414.2 PREDICTED: hypothetical protein [Pan troglodytes]. |
2 | 320 | ![]() |
Hs.696364 | CDNA FLJ33263 fis, clone ASTRO2006732, highly similar to Protein Wnt-5a precursor. |
2 | 320 | ![]() |
Hs.69517 | Lymphocyte antigen 6 complex, locus K (LY6K), mRNA. |
2 | 320 | ![]() |
Hs.67776 | Family with sequence similarity 83, member H, mRNA (cDNA clone IMAGE:3138324). |
2 | 320 | ![]() |
Hs.671456 | CDNA FLJ45493 fis, clone BRTHA2008598. |
2 | 320 | ![]() |
Hs.671259 | Transcribed locus. |
2 | 320 | ![]() |
Hs.668093 | Transcribed locus. |
2 | 320 | ![]() |
Hs.664500 | HOXC8 protein, exon 1. |
2 | 320 | ![]() |
Hs.663133 | Ski oncogene mRNA. |
2 | 320 | ![]() |
Hs.661081 | Transcribed locus. |
2 | 320 | ![]() |
Hs.660599 | Transcribed locus. |
2 | 320 | ![]() |
Hs.659828 | Transcribed locus. |
2 | 320 | ![]() |
Hs.659022 | Transcribed locus, moderately similar to NP_006464.1 TAF6-like RNA polymerase II [Homo sapiens]. |
2 | 320 | ![]() |
Hs.658245 | Inositol polyphosphate 4-phosphatase type II-alpha. |
2 | 320 | ![]() |
Hs.657347 | Muscleblind-like 2 (Drosophila), mRNA (cDNA clone IMAGE:4157895). |
2 | 320 | ![]() |
Hs.657267 | CDNA FLJ14344 fis, clone THYRO1001142. |
2 | 320 | ![]() |
Hs.656751 | CDNA FLJ33343 fis, clone BRACE2003614. |
2 | 320 | ![]() |
Hs.656425 | CDNA clone IMAGE:4932495. |
Source: NCBI UniGene
6,901 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Source: NCBI Clone Registry